pathways by using Petri nets. The goal of this paper is twofold. First, we discuss how the knowledge about metabolic pathways
can be represented with Petri nets. We point out the main problems that arise in the construction of a Petri net model of
a metabolic pathway and we outline some solutions proposed in the literature. Second, we present a comprehensive review of
recent research on this topic, in order to assess the maturity of the field and the availability of a methodology for modelling
a metabolic pathway by a corresponding Petri net.
- Content Type Journal Article
- DOI 10.1007/s11047-010-9180-6
- Authors
- Paolo Baldan, Dipartimento di Matematica Pura e Applicata, Università di Padova, via Trieste 63, 35121 Padova, Italy
- Nicoletta Cocco, Dipartimento di Informatica, Università Ca’ Foscari di Venezia, via Torino 155, 30172 Venezia Mestre, Italy
- Andrea Marin, Dipartimento di Informatica, Università Ca’ Foscari di Venezia, via Torino 155, 30172 Venezia Mestre, Italy
- Marta Simeoni, Dipartimento di Informatica, Università Ca’ Foscari di Venezia, via Torino 155, 30172 Venezia Mestre, Italy
- Journal Natural Computing
- Online ISSN 1572-9796
- Print ISSN 1567-7818
- Journal Volume Volume 9
- Journal Issue Volume 9, Number 4